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| Dependency | Optional | Group |
|---|---|---|
| filelock | false | |
| GridDataFormats | false | |
| joblib | false | |
| matplotlib | false | |
| mda-xdrlib | false | |
| mmtf-python | false | |
| numpy | false | |
| packaging | false | |
| scipy | false | |
| threadpoolctl | false | |
| tqdm | false | |
| biopython | true | analysis |
| chemfiles | true | extra-formats |
| dask | true | parallel |
| gsd | true | extra-formats |
| h5py | true | extra-formats |
| imdclient | true | extra-formats |
| mdahole2 | true | analysis |
| mdanalysis-sphinx-theme | true | doc |
| netCDF4 | true | extra-formats |
| networkx | true | analysis |
| parmed | true | extra-formats |
| pathsimanalysis | true | analysis |
| pybtex | true | doc |
| pybtex-docutils | true | doc |
| pyedr | true | extra-formats |
| pytng | true | extra-formats |
| rdkit | true | extra-formats |
| scikit-learn | true | analysis |
| seaborn | true | analysis |
| sphinx | true | doc |
| sphinx-sitemap | true | doc |
| sphinxcontrib-bibtex | true | doc |
| tidynamics | true | analysis |
| waterdynamics | true | analysis |