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| Dependency | Optional | Group |
|---|---|---|
| future | false | |
| ipython | false | |
| jinja2 | false | |
| lxml | false | |
| ndex2 | false | |
| networkx | false | |
| objectpath | false | |
| obonet | false | |
| pandas | false | |
| protmapper | false | |
| pybiopax | false | |
| pysb | false | |
| requests | false | |
| tqdm | false | |
| adeft | true | grounding |
| boto3 | true | aws |
| click | true | machine |
| cython | true | reach-offline |
| docstring-parser | true | api |
| flask | true | api |
| flask_cors | true | api |
| flask_restx | true | api |
| gilda | true | hypothesis |
| gunicorn | true | api |
| kappy | true | explanation |
| matplotlib | true | plot |
| nltk | true | geneways |
| paths-graph | true | explanation |
| pronto | true | owl |
| pybel | true | bel |
| pygraphviz | true | graph |
| pyjnius | true | reach-offline |
| pykqml | true | trips-offline |
| pynose | true | tests |
| pytest | true | tests |
| pytest-cov | true | tests |
| python-libsbml | true | sbml |
| pytz | true | machine |
| pyyaml | true | machine |
| reportlab | true | aws |
| scikit-learn | true | sklearn-belief |
| stemming | true | geneways |
| tweepy | true | machine |
| tzlocal | true | machine |
| unidecode | true | isi |