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Dependencies for phonopy

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Dependencies of phonopy (13).
Dependency	Optional	Group
h5py	false
matplotlib	false
numpy	false
phonors	false
PyYAML	false
spglib	false
symfc	false
cp2k-input-tools	true	cp2k
mypy	true	dev
pypolymlp	true	pypolymlp
pytest	true	dev
ruff	true	dev
seekpath	true	seekpath