Package profile
scanpy
- Summary: Single-Cell Analysis in Python.
- Author: Alex Wolf, Philipp Angerer, Fidel Ramirez, Isaac Virshup, Sergei Rybakov, Gokcen Eraslan, Tom White, Malte Luecken, Davide Cittaro, Tobias Callies, Marius Lange, Andrés R. Muñoz-Rojas
- Homepage: https://scanpy.org
- Source: https://github.com/scverse/scanpy (Repo profile)
- Number of releases: 87
- First release: 0.2.1 on 2017-07-24
- Latest release: 1.11.3 on 2025-07-01
Releases
PyPI Downloads
Dependencies
Scanpy has 61 dependencies, 40 of which optional.| Dependency | Optional |
|---|---|
| anndata | false |
| h5py | false |
| joblib | false |
| legacy-api-wrap | false |
| matplotlib | false |
| natsort | false |
| networkx | false |
| numba | false |
| numpy | false |
| packaging | false |
| pandas | false |
| patsy | false |
| pynndescent | false |
| scikit-learn | false |
| scipy | false |
| seaborn | false |
| session-info2 | false |
| statsmodels | false |
| tqdm | false |
| typing-extensions | false |
| umap-learn | false |
| bbknn | true |
| cudf | true |
| cugraph | true |
| cuml | true |
| dask | true |
| dask-ml | true |
| harmonypy | true |
| hatch-vcs | true |
| igraph | true |
| ipython | true |
| leidenalg | true |
| louvain | true |
| magic-impute | true |
| myst-nb | true |
| myst-parser | true |
| nbsphinx | true |
| pre-commit | true |
| pytest | true |
| pytest-cov | true |
| pytest-mock | true |
| pytest-randomly | true |
| pytest-rerunfailures | true |
| pytest-xdist | true |
| sam-algorithm | true |
| scanorama | true |
| scanpydoc | true |
| scikit-image | true |
| scikit-misc | true |
| sphinx | true |
| sphinx-autodoc-typehints | true |
| sphinx-book-theme | true |
| sphinx-copybutton | true |
| sphinx-design | true |
| sphinx-issues | true |
| sphinx-tabs | true |
| sphinxcontrib-bibtex | true |
| sphinxext-opengraph | true |
| towncrier | true |
| tuna | true |
| zarr | true |