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scanpy

Summary: Single-Cell Analysis in Python.
Author: Alex Wolf, Philipp Angerer, Fidel Ramirez, Isaac Virshup, Sergei Rybakov, Gokcen Eraslan, Tom White, Malte Luecken, Davide Cittaro, Tobias Callies, Marius Lange, Andrés R. Muñoz-Rojas
Homepage: https://scanpy.org
Source: https://github.com/scverse/scanpy
Repo profile
Number of releases: 85
First release: 0.2.1 on 2017-07-24T09:29:35
Latest release: 1.11.1 on 2025-03-31T08:47:25

Dependencies of scanpy (63).
Dependency	Optional
anndata	false
h5py	false
joblib	false
legacy-api-wrap	false
matplotlib	false
natsort	false
networkx	false
numba	false
numpy	false
packaging	false
pandas	false
patsy	false
pynndescent	false
scikit-learn	false
scipy	false
seaborn	false
session-info2	false
statsmodels	false
tqdm	false
typing-extensions	false
umap-learn	false
bbknn	true
cudf	true
cugraph	true
cuml	true
dask	true
dask-ml	true
harmonypy	true
hatch-vcs	true
igraph	true
ipython	true
leidenalg	true
louvain	true
magic-impute	true
myst-nb	true
myst-parser	true
nbsphinx	true
pre-commit	true
profimp	true
pytest	true
pytest-cov	true
pytest-mock	true
pytest-randomly	true
pytest-rerunfailures	true
pytest-xdist	true
readthedocs-sphinx-search	true
sam-algorithm	true
scanorama	true
scanpydoc	true
scikit-image	true
scikit-misc	true
setuptools	true
sphinx	true
sphinx-autodoc-typehints	true
sphinx-book-theme	true
sphinx-copybutton	true
sphinx-design	true
sphinx-tabs	true
sphinxcontrib-bibtex	true
sphinxext-opengraph	true
towncrier	true
zappy	true
zarr	true